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Post-migration work: updating past Jupyter Notebooks

I've updated the Jupyter Notebooks for posts up to this point, which basically means updating them in the resurrection post. There are other past posts which involve Jupyter notebooks, but as they're meant to be "frozen" posts I prefer to keep them as-is, even if the formatting is now altered. The only remaining notebook that requires an update as a notebook should be in the "Re-analyzing the Stanford COVID-19 antibody study" post, which I'll update when the post updates get to it.

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